Predictions of transcription factor binding sites (TFBS) are given in GFF3 format (http://www.sequenceontology.org/gff3.shtml). 

File contains comments (lines starting with single hash "#"), meta-data (lines starting with double hash "##"), and predicted sites. 

Site record contains 9 columns separated by tabs. 
Column 1: "seqid"
    The ID of the landmark used to establish the coordinate system for the current feature. In our case it is chromosome ID.

Column 2: "source"
    This field describes method used for predicting the feature. In our case these are "Motevo" and "IRUS".

Column3: "type"
    Type of the feature. In our case it is "Transcription_factor_binding_site" or "TFBS".

Column4: "start"
    Start position of the feature in 1-based integer coordinate system.

Column5: "end"
    End position of the feature in 1-based integer coordinate system.

Column6: "score"
    Posterior probability of the site.

Column7: "strand"
   Strand of the feature. "+" for positive strand and "-" for negative strand

Column8: "phase"
    Not defined for TFBS.

Column9: "attributes"
    A list of feature attributes given in format tag=value.
  Tags:
    "ID"          - unique ID of the feature.
    "Name"        - name of the feature. For TFBS has the same value as ID.
    "WM"          - name of weight matrix of the TFBS.
    "Sequence"    - sequence of the TFBS.
    "Promoter"    - ID of intergenic region of the TFBS. Has form of gene1-gene2/seqid:start..end.
    "Alignments"  - Sequences of the same site found in orthologous sequences. Given in pairs organism:sequence separated by "|".