MYOD1.p2		0.944:17927:Myod1:myogenic differentiation 1:::Myod-1,bHLHc1,MyoD,MYF3
TFAP4.p2		1.000:83383:Tcfap4:transcription factor AP4:::bHLHc41,Tfap4,AP-4
HOX{A5,B5}.p2		1.000:15413:Hoxb5:homeobox B5:::Hox-2.1	1.000:15402:Hoxa5:homeobox A5:::Hox-1.3
EP300.p2		0.492:328572:Ep300:E1A binding protein p300:KAT::KAT3B,p300
NFE2.p2		1.000:18022:Nfe2:nuclear factor, erythroid derived 2:::p45nf-e2,p45NFE2,p45,NF-E2
ATF2.p2		1.000:11909:Atf2:activating transcription factor 2:::Creb2,ATF-2,mXBP,CRE-BP
JUN.p2		1.000:16476:Jun:Jun oncogene:::c-jun,Junc	0.862:16478:Jund:Jun proto-oncogene related gene d:::	0.815:16477:Junb:Jun-B oncogene:::
NFIX.p2		0.996:18032:Nfix:nuclear factor I/X:::
MZF1.p2		0.990:109889:Mzf1:myeloid zinc finger 1:ZSCAN::Znf42,Mzf2,Zfp121,Zfp98
ZBTB6.p2		1.000:241322:Zbtb6:zinc finger and BTB domain containing 6:ZBTB::Zfp482
IKZF1.p2		0.853:22778:Ikzf1:IKAROS family zinc finger 1:ZNF, IKZF::Ikaros,Zfpn1a1,LyF-1
CUX2.p2		0.660:13048:Cux2:cut-like homeobox 2:::ENSMUSG00000072641,Cux-2,Cutl2,Cux2
POU3F1..4.p2		1.000:18991:Pou3f1:POU domain, class 3, transcription factor 1:::Tst-1,Test1,Scip,Oct6,Oct-6,Tst1,Otf6	0.955:18993:Pou3f3:POU domain, class 3, transcription factor 3:::Brn1,Brn-1,Otf8	0.955:18992:Pou3f2:POU domain, class 3, transcription factor 2:::Otf7,Brn2,Brn-2	0.902:18994:Pou3f4:POU domain, class 3, transcription factor 4:::BRN-4,Otf9,Brn4
HSF1,2.p2		1.000:15499:Hsf1:heat shock factor 1:::heat shock transcription factor 1	1.000:15500:Hsf2:heat shock factor 2:::
POU2F1..3.p2		1.000:18987:Pou2f2:POU domain, class 2, transcription factor 2:::Otf-2,Oct2b,Oct2a,Oct-2,Otf2	0.932:18986:Pou2f1:POU domain, class 2, transcription factor 1:::Oct-1C,Oct-1z,Oct1,Otf1,Oct-1A,Otf-1,oct-1,Oct-1B	0.886:18988:Pou2f3:POU domain, class 2, transcription factor 3:::Skin-1a,Skn-li,Skn-1a,Skin,Oct11,Otf11,Oct-11a,Otf-11,Epoc-1
SREBF1,2.p2		1.000:20787:Srebf1:sterol regulatory element binding transcription factor 1:::SREBP-1a,SREBP1,SREBP-1c,SREBP-1,bHLHd1,ADD-1,SREBP1c	0.804:20788:Srebf2:sterol regulatory element binding factor 2:::bHLHd2,SREBP-2,SREBP2gc,SREBP2
HAND1,2.p2		1.000:15110:Hand1:heart and neural crest derivatives expressed transcript 1:::Thing1,Hxt,eHAND,bHLHa27,Th1,Ehand1	0.868:15111:Hand2:heart and neural crest derivatives expressed transcript 2:::bHLHa26,Thing2,Hed,Ehand2,dHAND
STAT2,4,6.p2		1.000:20847:Stat2:signal transducer and activator of transcription 2:::	1.000:20849:Stat4:signal transducer and activator of transcription 4:::	0.994:20852:Stat6:signal transducer and activator of transcription 6:::
STAT1,3.p3		1.000:20846:Stat1:signal transducer and activator of transcription 1:::	0.998:20848:Stat3:signal transducer and activator of transcription 3:::Aprf
EGR1..3.p2		1.000:13655:Egr3:early growth response 3:::Pilot	1.000:13653:Egr1:early growth response 1:::NGF1-A,NGFIA,Zenk,Egr-1,Krox-1,ETR103,TIS8,Krox-24,Zif268,Zfp-6,NGFI-A,Krox24	0.978:13654:Egr2:early growth response 2:::Egr-2,Krox-20,Zfp-25,NGF1-B,Krox20
XBP1.p3		1.000:22433:Xbp1:X-box binding protein 1:::D11Ertd39e,TREB5,TREB-5,XBP-1
REST.p3		0.949:19712:Rest:RE1-silencing transcription factor:::NRSF
EBF1.p2		0.998:13591:Ebf1:early B-cell factor 1:::Olf-1,Olf1,O/E-1
LMO2.p2		1.000:16909:Lmo2:LIM domain only 2:::Rbtn-2,Rbtn2,Rhom-2
RFX1..5_RFXANK_RFXAP.p2		1.000:19724:Rfx1:regulatory factor X, 1 (influences HLA class II expression):::	1.000:170767:Rfxap:regulatory factor X-associated protein:::	1.000:53970:Rfx5:regulatory factor X, 5 (influences HLA class II expression):::	1.000:19727:Rfxank:regulatory factor X-associated ankyrin-containing protein:::Tvl1	1.000:71137:Rfx4:regulatory factor X, 4 (influences HLA class II expression):::	1.000:19726:Rfx3:regulatory factor X, 3 (influences HLA class II expression):::MRFX3	0.996:19725:Rfx2:regulatory factor X, 2 (influences HLA class II expression):::
NFATC1..3.p2		1.000:18021:Nfatc3:nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3:NFAT::D8Ertd281e,NFATx,NFAT4	1.000:18019:Nfatc2:nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2:NFAT::NFAT1-D,NFAT1,NFATp	0.963:18018:Nfatc1:nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1:NFAT::NFATc,NFAT2,NF-ATc
PAX3,7.p2		0.902:18509:Pax7:paired box gene 7:PAX::Pax-7	0.689:18505:Pax3:paired box gene 3:PAX::Pax-3
PAX8.p2		1.000:18510:Pax8:paired box gene 8:PAX::Pax-8
FOXN1.p2		0.990:15218:Foxn1:forkhead box N1:FOX::Hfh11,D11Bhm185e,whn
ZFP161.p2		0.993:22666:Zfp161:zinc finger protein 161:ZBTB::ZF5
ETS1,2.p2		0.500:23872:Ets2:E26 avian leukemia oncogene 2, 3' domain:::Ets-2	0.482:23871:Ets1:E26 avian leukemia oncogene 1, 5' domain:::Tpl1,p51Ets-1,p42Ets-1,Ets-1
MSX1,2.p2		1.000:17701:Msx1:homeobox, msh-like 1:::msh,Hox7.1,Hox7,muscle-segment homeobox,Hox-7	0.965:17702:Msx2:homeobox, msh-like 2:::Hox-8,Hox8,Hox8.1
ZEB1.p2		0.998:21417:Zeb1:zinc finger E-box binding homeobox 1:ZNF::Zfx1a,Zfhx1a,MEB1,AREB6,[delta]EF1,ZEB,Tcf8,Zfhep,Tcf18,Nil2
ALX1.p2		0.756:216285:Alx1:ALX homeobox 1:::Cart1
TGIF1.p2		1.000:21815:Tgif1:TGFB-induced factor homeobox 1:::Tgif
HOXA9_MEIS1.p2		1.000:17268:Meis1:Meis homeobox 1:::	0.984:15405:Hoxa9:homeobox A9:::Hox-1.7,D6a9
NKX6-1,2.p2		1.000:18096:Nkx6-1:NK6 homeobox 1:::NKX6A,Nkx6.1	0.965:14912:Nkx6-2:NK6 homeobox 2:::Nkx6.2,Gtx
NKX2-1,4.p2		1.000:21869:Nkx2-1:NK2 homeobox 1:::T/EBP,thyroid transcription factor-1,Titf1,thyroid-specific enhancer-binding protein,tinman,Ttf-1	1.000:228731:Nkx2-4:NK2 transcription factor related, locus 4 (Drosophila):::Nkx-2.4,tinman
HMX1.p2		0.947:15371:Hmx1:H6 homeobox 1:::Nkx5-3
VSX1,2.p2		1.000:12677:Vsx2:visual system homeobox 2:::Hox10,Chx10,Hox-10	0.912:114889:Vsx1:visual system homeobox 1 homolog (zebrafish):::CHX10-like
ZIC1..3.p2		0.991:22771:Zic1:zinc finger protein of the cerebellum 1:ZNF::odd-paired homolog	0.991:22772:Zic2:zinc finger protein of the cerebellum 2:::odd-paired homolog,Ku,GENA 29	0.979:22773:Zic3:zinc finger protein of the cerebellum 3:ZNF::
NKX3-1.p2		1.000:18095:Nkx3-1:NK-3 transcription factor, locus 1 (Drosophila):::Nkx-3.1,bagpipe,NKX3.1,NKX3A,Bax
ARID5B.p2		1.000:71371:Arid5b:AT rich interactive domain 5B (MRF1-like):::Mrf2,Mrf2alpha,Desrt,Mrf2beta
BPTF.p2		1.000:207165:Bptf:bromodomain PHD finger transcription factor:::Falz
STAT5{A,B}.p2		1.000:20851:Stat5b:signal transducer and activator of transcription 5B:::	1.000:20850:Stat5a:signal transducer and activator of transcription 5A:::STAT5
GATA6.p2		1.000:14465:Gata6:GATA binding protein 6:::
POU6F1.p2		0.985:19009:Pou6f1:POU domain, class 6, transcription factor 1:::Emb,cns-1
KLF12.p2		0.998:16597:Klf12:Kruppel-like factor 12:KLF::AP-2rep
FOXO1,3,4.p2		0.993:56458:Foxo1:forkhead box O1:FOX::FKHR,Foxo1a,Fkhr1,Afxh	0.986:54601:Foxo4:forkhead box O4:FOX::Mllt7,Foxo4,afx,Afxh	0.931:56484:Foxo3:forkhead box O3:FOX::FKHRL1,Foxo3a,Fkhr2
CDC5L.p2		1.000:71702:Cdc5l:cell division cycle 5-like (S. pombe):::PCDC5RP
PITX1..3.p2		0.731:18741:Pitx2:paired-like homeodomain transcription factor 2:::solurshin,Munc30,Brx1,Brx1a,Pitx2a,Pitx2b,Brx1b,Pitx2c,Otlx2,Rieg,Ptx2	0.731:18742:Pitx3:paired-like homeodomain transcription factor 3:::Ptx3	0.705:18740:Pitx1:paired-like homeodomain transcription factor 1:::P-OTX,Potx,Bft,Ptx1
ATF6.p2		1.000:226641:Atf6:activating transcription factor 6:::ESTM49,Atf6alpha
TLX2.p2		1.000:21909:Tlx2:T-cell leukemia, homeobox 2:::Ncx1,Enx,Hox11L.1,Tlx1l1,NCX,Hox11l1
NKX2-2,8.p2		1.000:18088:Nkx2-2:NK2 transcription factor related, locus 2 (Drosophila):::Nkx2.2,tinman,Nkx-2.2	0.930:18094:Nkx2-9:NK2 transcription factor related, locus 9 (Drosophila):::tinman,Nkx-2.9,Nkx2.9
BACH2.p2		0.999:12014:Bach2:BTB and CNC homology 2:::
PATZ1.p2		0.783:56218:Patz1:POZ (BTB) and AT hook containing zinc finger 1:ZBTB::Zfp278,MAZR,POZ-AT hook-zinc finger protein
LHX3,4.p2		1.000:16871:Lhx3:LIM homeobox protein 3:::P-LIM,mLim-3,Lim3	0.947:16872:Lhx4:LIM homeobox protein 4:::Gsh4,Gsh-4
ESRRA.p2		0.958:26379:Esrra:estrogen related receptor, alpha:::ERRalpha,Estrra,Err1,Nr3b1
ATF4.p2		1.000:11911:Atf4:activating transcription factor 4:::CREB2,Atf-4,C/ATF,TAXREB67
NR6A1.p2		1.000:14536:Nr6a1:nuclear receptor subfamily 6, group A, member 1:::NCNF,Gcnf
ZNF238.p2		1.000:30928:Zfp238:zinc finger protein 238:ZBTB::RP58
CRX.p2		1.000:12951:Crx:cone-rod homeobox containing gene:::Crx1
DBP.p2		1.000:13170:Dbp:D site albumin promoter binding protein:::
NR1H4.p2		1.000:20186:Nr1h4:nuclear receptor subfamily 1, group H, member 4:::RIP14,Rxrip14,HRR1,Fxr,FXR
ONECUT1,2.p2		1.000:225631:Onecut2:one cut domain, family member 2:::OC-2,Oc2	1.000:15379:Onecut1:one cut domain, family member 1:::OC-1,HNF6,Hfh12,Hnf6,Oc1,D9Ertd423e
HOX{A4,D4}.p2		1.000:15401:Hoxa4:homeobox A4:::Hox-1.4	0.982:15436:Hoxd4:homeobox D4:::Hox-4.2,Hox-5.1
MAZ.p2		1.000:17188:Maz:MYC-associated zinc finger protein (purine-binding transcription factor):ZNF::Pur-1,SAF-1,PUR1,SAF-2
MTF1.p2		0.999:17764:Mtf1:metal response element binding transcription factor 1:::MTF-1,metal response element-binding transcription factor 1,metalloregulatory transcription factor,Thyls
NRF1.p2		1.000:18181:Nrf1:nuclear respiratory factor 1:::D6Ertd415e
LEF1_TCF7_TCF7L1,2.p2		1.000:21414:Tcf7:transcription factor 7, T-cell specific:::TCF-1,T-cell factor 1,Tcf1,T cell factor-1	1.000:21416:Tcf7l2:transcription factor 7-like 2, T-cell specific, HMG-box:::mTcf-4E,Tcf4,mTcf-4B,TCF4E,Tcf-4,TCF4B	1.000:16842:Lef1:lymphoid enhancer binding factor 1:::Lef-1,lymphoid enhancer factor 1	0.986:21415:Tcf7l1:transcription factor 7-like 1 (T-cell specific, HMG box):::Tcf3
GTF2I.p2		1.000:14886:Gtf2i:general transcription factor II I:::TFII-I,BAP-135
GTF2A1,2.p2		1.000:83602:Gtf2a1:general transcription factor II A, 1:::37kDa,19kDa,TfIIAa/b	1.000:235459:Gtf2a2:general transcription factor II A, 2:::TfIIg,12kDa
ZNF148.p2		0.912:22661:Zfp148:zinc finger protein 148:ZNF::beta enolase repressor factor 1,ZBP-89,BFCOL1,BERF-1
NR5A1,2.p2		1.000:26423:Nr5a1:nuclear receptor subfamily 5, group A, member 1:::Ad4BP,ELP,adrenal 4-binding protein,SF1,Ftz-F1,Ftzf1,SF-1,steroidogenic factor 1	0.895:26424:Nr5a2:nuclear receptor subfamily 5, group A, member 2:::D1Ertd308e,Ftf,LRH-1
SMAD1..7,9.p2		1.000:17129:Smad5:MAD homolog 5 (Drosophila):SMAD::MusMLP,Madh5,Smad 5	1.000:17125:Smad1:MAD homolog 1 (Drosophila):SMAD::Smad 1,Madh1,Madr1	1.000:17127:Smad3:MAD homolog 3 (Drosophila):SMAD::Smad 3,Madh3	1.000:17128:Smad4:MAD homolog 4 (Drosophila):SMAD::Smad 4,DPC4,Dpc4,Madh4,D18Wsu70e	1.000:17126:Smad2:MAD homolog 2 (Drosophila):SMAD::Smad 2,Madh2,Madr2	0.998:17130:Smad6:MAD homolog 6 (Drosophila):SMAD::Smad 6,Madh6	0.998:17131:Smad7:MAD homolog 7 (Drosophila):SMAD::Madh7	0.965:55994:Smad9:MAD homolog 9 (Drosophila):SMAD::SMAD8A,SMAD8B,Madh9,MADH6
ZNF384.p2		0.825:269800:Zfp384:zinc finger protein 384:ZNF::Nmp4,Ciz
HIF1A.p2		1.000:15251:Hif1a:hypoxia inducible factor 1, alpha subunit:::MOP1,bHLHe78,HIF-1alpha,HIF1alpha
TFAP2B.p2		1.000:21419:Tcfap2b:transcription factor AP-2 beta:::AP-2(beta)
POU1F1.p2		1.000:18736:Pou1f1:POU domain, class 1, transcription factor 1:::Pit1-rs1,Hmp1,GHF-1,Pit1,Pit-1
TFDP1.p2		1.000:21781:Tfdp1:transcription factor Dp 1:::Dp1,Drtf1
NFE2L2.p2		1.000:18024:Nfe2l2:nuclear factor, erythroid derived 2, like 2:::Nrf2
FOSL2.p2		1.000:14284:Fosl2:fos-like antigen 2:::Fra-2
TFCP2.p2		1.000:21422:Tcfcp2:transcription factor CP2:::UBP-1,CP-2,CP2,LBP-1d,LBP1,LBP-1c,LSF
CDX1,2,4.p2		1.000:12590:Cdx1:caudal type homeobox 1:::Cdx,Cdx-1	1.000:12591:Cdx2:caudal type homeobox 2:::Cdx-2	0.895:12592:Cdx4:caudal type homeobox 4:::Cdx-3,Cdx-4,Cdx3
FOXP3.p2		1.000:20371:Foxp3:forkhead box P3:FOX::scurfin,JM2
AIRE.p2		1.000:11634:Aire:autoimmune regulator (autoimmune polyendocrinopathy candidiasis ectodermal:::
IKZF2.p2		0.977:22779:Ikzf2:IKAROS family zinc finger 2:ZNF, IKZF::Zfpn1a2,Helios
HES1.p2		1.000:15205:Hes1:hairy and enhancer of split 1 (Drosophila):::Hry,bHLHb39
HMGA1,2.p2		1.000:15361:Hmga1:high mobility group AT-hook 1:::Hmga1b,Hmgi,HMGI(Y),Hmga1a,HMG-I(Y),HMGY,Hmgiy	1.000:15364:Hmga2:high mobility group AT-hook 2:::HMGI-C,Hmgic
PDX1.p2		1.000:18609:Pdx1:pancreatic and duodenal homeobox 1:::Ipf1,IPF-1,pdx-1,STF-1,Mody4,IDX-1
TBX4,5.p2		1.000:21388:Tbx5:T-box 5:TBX::	0.935:21387:Tbx4:T-box 4:TBX::
GLI1..3.p2		1.000:14632:Gli1:GLI-Kruppel family member GLI1:::Zfp-5,Zfp5	0.986:14633:Gli2:GLI-Kruppel family member GLI2:::	0.969:14634:Gli3:GLI-Kruppel family member GLI3:::Bph,brachyphalangy
GFI1B.p2		0.803:14582:Gfi1b:growth factor independent 1B:::Gfi-1B
PRDM1.p3		1.000:12142:Prdm1:PR domain containing 1, with ZNF domain:::PRDI-BF1,Blimp-1,Blimp1
GZF1.p2		0.810:74533:Gzf1:GDNF-inducible zinc finger protein 1:ZBTB::Zfp336
HIC1.p2		0.997:15248:Hic1:hypermethylated in cancer 1:ZBTB::HIC-1
ZBTB16.p2		0.999:235320:Zbtb16:zinc finger and BTB domain containing 16:ZBTB::Zfp145,PLZF,Green's luxoid
RUNX1..3.p2		1.000:12394:Runx1:runt related transcription factor 1:::AML1,runt domain, alpha subunit 2,Pebp2a2,Cbfa2	0.933:12399:Runx3:runt related transcription factor 3:::Cbfa3,AML2	0.919:12393:Runx2:runt related transcription factor 2:::SL3-3 enhancer factor 1,AML3,polyomavirus enhancer binding factor 2  (PEBP2),PEBP2 alpha A,PEBP2aA,Cbfa1,Pebpa2a,Osf2
TFAP2{A,C}.p2		1.000:21420:Tcfap2c:transcription factor AP-2, gamma:::AP2gamma,Ap-2.2,Stra2	1.000:21418:Tcfap2a:transcription factor AP-2, alpha:::AP-2 alpha,AP2alpha,Ap2tf,Ap-2 (a),Ap2
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2		1.000:11863:Arnt:aryl hydrocarbon receptor nuclear translocator:::D3Ertd557e,bHLHe2,ESTM42,Hif1b	1.000:17187:Max:Max protein:::bHLHd7,bHLHd5,bHLHd8,bHLHd6,bHLHd4	1.000:17869:Myc:myelocytomatosis oncogene:::Niard,Nird,bHLHe39,Myc2,c-myc	1.000:22278:Usf1:upstream transcription factor 1:::bHLHb11,upstream stimulatory factor	1.000:20893:Bhlhe40:basic helix-loop-helix family, member e40:::eip1 (E47 interaction protein 1),Stra13,DEC1,Clast5,Bhlhb2,cytokine response gene 8,Stra14,CR8,Sharp2	0.963:11864:Arnt2:aryl hydrocarbon receptor nuclear translocator 2:::bHLHe1
AHR_ARNT_ARNT2.p2		1.000:11863:Arnt:aryl hydrocarbon receptor nuclear translocator:::D3Ertd557e,bHLHe2,ESTM42,Hif1b	0.998:11622:Ahr:aryl-hydrocarbon receptor:::Ahre,dioxin receptor,bHLHe76,Ahh,In,Ah	0.963:11864:Arnt2:aryl hydrocarbon receptor nuclear translocator 2:::bHLHe1
AR.p2		0.943:11835:Ar:androgen receptor:::
T.p2		0.994:20997:T:brachyury:TBX::T1,Bra
PAX5.p2		1.000:18507:Pax5:paired box gene 5:PAX::Pax-5,EBB-1
RXR{A,B,G}.p2		0.232:20181:Rxra:retinoid X receptor alpha:::RXR alpha 1,RXRalpha1	0.228:20182:Rxrb:retinoid X receptor beta:::Nr2b2,H-2RIIBP,RCoR-1,Rub	0.225:20183:Rxrg:retinoid X receptor gamma:::Nr2b3
HNF4A_NR2F1,2.p2		1.000:13865:Nr2f1:nuclear receptor subfamily 2, group F, member 1:::COUP-TF1,Tcfcoup1,Erbal3,COUP-TFI	1.000:11819:Nr2f2:nuclear receptor subfamily 2, group F, member 2:::Tcfcoup2,COUP-TFII,ARP-1,EAR3,COUP-TF2,Aporp1	1.000:15378:Hnf4a:hepatic nuclear factor 4, alpha:::Tcf4,Hnf4,Tcf14,Nuclear receptor 2A1,Nr2a1,HNF4 alpha,HNF-4,MODY1
CREB1.p2		1.000:12912:Creb1:cAMP responsive element binding protein 1:::Creb-1,Creb
CEBPA,B_DDIT3.p2		1.000:13198:Ddit3:DNA-damage inducible transcript 3:::CHOP-10,C/EBP homoologous protein 10,chop,gadd153,CHOP10	1.000:12606:Cebpa:CCAAT/enhancer binding protein (C/EBP), alpha:::C/ebpalpha,Cebp,C/EBP alpha	1.000:12608:Cebpb:CCAAT/enhancer binding protein (C/EBP), beta:::CRP2,C/EBPbeta,Nfil6,LAP,C/EBP BETA,LIP,NF-M,IL-6DBP,NF-IL6
E2F1..5.p2		1.000:104394:E2f4:E2F transcription factor 4:::	1.000:13559:E2f5:E2F transcription factor 5:::E2F-5	1.000:242705:E2f2:E2F transcription factor 2:::	1.000:13555:E2f1:E2F transcription factor 1:::E2F-1	0.970:13557:E2f3:E2F transcription factor 3:::E2F3b,E2f3a
NFIL3.p2		1.000:18030:Nfil3:nuclear factor, interleukin 3, regulated:::E4BP4
ELF1,2,4.p2		0.860:69257:Elf2:E74-like factor 2:::NERF-2	0.826:13709:Elf1:E74-like factor 1:::p70,Elf-1,mElf-1	0.814:56501:Elf4:E74-like factor 4 (ets domain transcription factor):::myeloid elf-1 like factor,MEF
EN1,2.p2		1.000:13798:En1:engrailed 1:::engrailed-1,Mo-en.1,En-1	0.947:13799:En2:engrailed 2:::En-2
ELK1,4_GABP{A,B1}.p3		1.000:14390:Gabpa:GA repeat binding protein, alpha:::GABPalpha	1.000:14391:Gabpb1:GA repeat binding protein, beta 1:::NRF2B2,E4TF1-47,BABPB2,E4TF1,NRF2B1,E4Tf1B,GABPB1-1,GABPB1-2,E4TF1-53	1.000:13714:Elk4:ELK4, member of ETS oncogene family:::Sap1	1.000:13712:Elk1:ELK1, member of ETS oncogene family:::Elk-1
EVI1.p2		0.928:14013:Mecom:MDS1 and EVI1 complex locus:::MDS1-EVI1,Prdm3,Jbo,Mds1,ZNFPR1B1,Evi-1,Evi1
FOX{F1,F2,J1}.p2		1.000:14238:Foxf2:forkhead box F2:FOX::Fkh20,LUN,FREAC2	1.000:15223:Foxj1:forkhead box J1:FOX::HFH-4,Hfh4,FKHL-13	0.969:15227:Foxf1a:forkhead box F1a:FOX::HFH-8,Hfh8,Freac-1,FREAC1,Foxf1
FOX{D1,D2}.p2		1.000:17301:Foxd2:forkhead box D2:FOX::Mf2	1.000:15229:Foxd1:forkhead box D1:FOX::FREAC4,BF-2,Hfh10,Hfhbf2
FOX{C1,C2}.p2		1.000:17300:Foxc1:forkhead box C1:FOX::Mf1,frkhda,fkh-1,Mf4,FREAC3,fkh1,Fkh1	0.979:14234:Foxc2:forkhead box C2:FOX::Hfhbf3,Fkh14,MFH-1,Mfh1
FOXL1.p2		1.000:14241:Foxl1:forkhead box L1:FOX::fkh6,Fkh6,FREAC7,fkh-6
GATA1..3.p2		1.000:14460:Gata1:GATA binding protein 1:::Gata-1,Gf-1	1.000:14461:Gata2:GATA binding protein 2:::Gata-2	1.000:14462:Gata3:GATA binding protein 3:::Gata-3
GFI1.p2		0.856:14581:Gfi1:growth factor independent 1:ZNF::Pal-1,Gfi-1,Pal1
KLF4.p3		0.888:16600:Klf4:Kruppel-like factor 4 (gut):KLF::EZF,Zie,Gklf
FOXQ1.p2		1.000:15220:Foxq1:forkhead box Q1:FOX::Hfh1l,HFH-1,Hfh1,sa
FOXD3.p2		1.000:15221:Foxd3:forkhead box D3:FOX::Hfh2,Genesis,CWH3
FOX{I1,J2}.p2		1.000:14233:Foxi1:forkhead box I1:FOX::HFH-3,Fkh10,Hfh3	1.000:60611:Foxj2:forkhead box J2:FOX::Fhx
HLF.p2		1.000:217082:Hlf:hepatic leukemia factor:::
HNF1A.p2		1.000:21405:Hnf1a:HNF1 homeobox A:::hepatocyte nuclear factor 1,HNF1,Hnf-1,Hnf1alpha,HNF1-alpha,LFB1,Tcf1,HNF1[a]
FOXA2.p3		0.989:15376:Foxa2:forkhead box A2:FOX::Hnf3b,HNF3beta,HNF3-beta,Tcf3b,Hnf-3b,Tcf-3b
NHLH1,2.p2		1.000:18071:Nhlh1:nescient helix loop helix 1:::bHLHa35,Hen1,Tal2,Nscl	0.981:18072:Nhlh2:nescient helix loop helix 2:::bHLHa34,NSCL2,Nscl-2,Hen2
MEF2{A,B,C,D}.p2		1.000:17258:Mef2a:myocyte enhancer factor 2A:MEF2::	0.980:17260:Mef2c:myocyte enhancer factor 2C:MEF2::	0.961:17261:Mef2d:myocyte enhancer factor 2D:MEF2::	0.922:17259:Mef2b:myocyte enhancer factor 2B:MEF2::
MYBL2.p2		0.266:17865:Mybl2:myeloblastosis oncogene-like 2:::Bmyb,B-Myb
MYFfamily.p2		0.283:17927:Myod1:myogenic differentiation 1:::Myod-1,bHLHc1,MyoD,MYF3	0.252:17878:Myf6:myogenic factor 6:::herculin,MRF4,bHLHc4	0.240:17877:Myf5:myogenic factor 5:::bHLHc2,Myf-5	0.233:17928:Myog:myogenin:::bHLHc3,myo
NFY{A,B,C}.p2		0.382:18046:Nfyc:nuclear transcription factor-Y gamma:::	0.332:18045:Nfyb:nuclear transcription factor-Y beta:::Cbf-A	0.286:18044:Nfya:nuclear transcription factor-Y alpha:::Sez10,Cbf-b
NFKB1_REL_RELA.p2		1.000:19697:Rela:v-rel reticuloendotheliosis viral oncogene homolog A (avian):::p65 NF kappaB,p65	1.000:19696:Rel:reticuloendotheliosis oncogene:::c-Rel	1.000:18033:Nfkb1:nuclear factor of kappa light polypeptide gene enhancer in B-cells 1, p105:::nuclear factor kappaB p50,NF-kappaB p50,p50,NF-kappaB,p50/p105,p50 subunit of NF kappaB,NF kappaB1
NKX2-3_NKX2-5.p2		1.000:18091:Nkx2-5:NK2 transcription factor related, locus 5 (Drosophila):::Nkx-2.5,Nkx2.5,Csx,tinman	0.930:18089:Nkx2-3:NK2 transcription factor related, locus 3 (Drosophila):::Nkx-2.3,tinman,Nkx2.3
RXRG_dimer.p3		1.000:22260:Nr1h2:nuclear receptor subfamily 1, group H, member 2:::LXRbeta,RIP15,Unr2,LXRB	1.000:20181:Rxra:retinoid X receptor alpha:::RXR alpha 1,RXRalpha1	1.000:19016:Pparg:peroxisome proliferator activated receptor gamma:::Ppar-gamma2,PPAR-gamma,PPARgamma,PPARgamma2,Nr1c3	0.996:19013:Ppara:peroxisome proliferator activated receptor alpha:::PPAR-alpha,PPARalpha,Nr1c1,Ppar	0.934:20182:Rxrb:retinoid X receptor beta:::Nr2b2,H-2RIIBP,RCoR-1,Rub	0.926:20183:Rxrg:retinoid X receptor gamma:::Nr2b3
PPARG.p2		1.000:19016:Pparg:peroxisome proliferator activated receptor gamma:::Ppar-gamma2,PPAR-gamma,PPARgamma,PPARgamma2,Nr1c3
PAX2.p2		1.000:18504:Pax2:paired box gene 2:PAX::Pax-2,Opdc
PAX4.p2		0.907:18506:Pax4:paired box gene 4:PAX::Pax-4
PAX6.p2		1.000:18508:Pax6:paired box gene 6:PAX::Pax-6,Dickie's small eye,AEY11,Dey,Gsfaey11
PBX1.p2		1.000:18514:Pbx1:pre B-cell leukemia transcription factor 1:::Pbx-1
RORA.p2		0.707:19883:Rora:RAR-related orphan receptor alpha:::Nr1f1,tmgc26
RREB1.p2		0.952:68750:Rreb1:ras responsive element binding protein 1:::
RXRA_VDR{dimer}.p2		1.000:22337:Vdr:vitamin D receptor:::Nr1i1
PRRX1,2.p2		1.000:20204:Prrx2:paired related homeobox 2:::S8,Prx2	0.965:18933:Prrx1:paired related homeobox 1:::Pmx1,Prx1,mHox,K-2
SOX{8,9,10}.p2		1.000:20682:Sox9:SRY-box containing gene 9:SOX::	0.986:20681:Sox8:SRY-box containing gene 8:SOX::	0.957:20665:Sox10:SRY-box containing gene 10:SOX::Sox21
SOX17.p2		1.000:20671:Sox17:SRY-box containing gene 17:SOX::
SPIB.p2		1.000:272382:Spib:Spi-B transcription factor (Spi-1/PU.1 related):::Spi-B
SRF.p3		1.000:20807:Srf:serum response factor:::
SRY.p2		1.000:21674:Sry:sex determining region of Chr Y:::Tdf,Tdy
RBPJ.p2		0.588:19664:Rbpj:recombination signal binding protein for immunoglobulin kappa J region:::RBPjk,RBP-J kappa,Rbpsuh,Igkjrb,CBF1,Igkrsbp
SNAI1..3.p2		0.208:20583:Snai2:snail homolog 2 (Drosophila):SNAI::Snail2,Slugh,Slug	0.195:20613:Snai1:snail homolog 1 (Drosophila):SNAI::Sna,Snail1,Snail,Sna1	0.192:30927:Snai3:snail homolog 3 (Drosophila):SNAI::Smuc,Snail-related gene from muscle cells,Zfp293
SOX5.p2		1.000:20678:Sox5:SRY-box containing gene 5:SOX::
ZNF143.p2		0.678:20841:Zfp143:zinc finger protein 143:ZNF::KRAB14,Zfp80-rs1,Zfp79,Staf,D7Ertd805e,pHZ-1
NFE2L1.p2		1.000:18023:Nfe2l1:nuclear factor, erythroid derived 2,-like 1:::TCF-11,TCF11,NRF1,LCR-F1,Lcrf1
TEAD1.p2		0.969:21676:Tead1:TEA domain family member 1:::Gtrgeo5,TEAD-1,TEF-1,mTEF-1,Tcf13	1.000:21677:Tead2:TEA domain family member 2:::Etdf,TEF-4,TEAD-2	1.000:21678:Tead3:TEA domain family member 3:::TEAD-3,Tcf13r2,TEF-5,DTEF-1,ETFR-1	1.000:21679:Tead4:TEA domain family member 4:::ETFR-2a,TEF-3,Tef3,TEAD-4,Etfr2,Tefr,Tcf13r1,Tefr1a
TAL1_TCF{3,4,12}.p2		1.000:21423:Tcf3:transcription factor 3:::ALF2,E12,bHLHb21,Tcfe2a,A1,E47,Pan1,E2A,Pan2	1.000:21413:Tcf4:transcription factor 4:::E2.2,bHLHb19,SEF-2,TFE,ME2,ITF-2b,ASP-I2,MITF-2A,SEF2-1,E2-2,ITF-2,MITF-2B	1.000:21349:Tal1:T-cell acute lymphocytic leukemia 1:::bHLHa17,Scl,SCL/tal-1	0.963:21406:Tcf12:transcription factor 12:::HTF4,bHLHb20,HEB,HTF-4,REB,ALF1,HEBAlt,ME1
HOX{A6,A7,B6,B7}.p2		0.930:15414:Hoxb6:homeobox B6:::Hox-2.2	0.930:15404:Hoxa7:homeobox A7:::Hox-1.1	0.912:15415:Hoxb7:homeobox B7:::Hox-2.3	0.912:15403:Hoxa6:homeobox A6:::Hox-1.2
YY1.p2		1.000:22632:Yy1:YY1 transcription factor:::Yin Yang 1,delta transcription factor,UCRBP transcription factor,NF-E1
FOS_FOS{B,L1}_JUN{B,D}.p2		1.000:14281:Fos:FBJ osteosarcoma oncogene:::cFos,c-fos,D12Rfj1	1.000:16477:Junb:Jun-B oncogene:::	1.000:14283:Fosl1:fos-like antigen 1:::fra-1,Fra1	1.000:16478:Jund:Jun proto-oncogene related gene d:::	0.956:14282:Fosb:FBJ osteosarcoma oncogene B:::
MYB.p2		1.000:17863:Myb:myeloblastosis oncogene:::c-myb
TP53.p2		1.000:22059:Trp53:transformation related protein 53:::p44,p53
TBP.p2		1.000:21374:Tbp:TATA box binding protein:::Gtf2d
SPZ1.p2		0.167:79401:Spz1:spermatogenic leucine zipper 1:::
ESR1.p2		0.998:13982:Esr1:estrogen receptor 1 (alpha):::ER-alpha,ERalpha,ESR,ER[a],Nr3a1,ERa,Estra,Estr
NR3C1.p2		1.000:14815:Nr3c1:nuclear receptor subfamily 3, group C, member 1:::glucocorticoid receptor,GR,Grl1,Grl-1
ZNF423.p2		0.212:94187:Zfp423:zinc finger protein 423:ZNF::ataxia1,Ebfaz,Zfp104,Roaz
MAFB.p2		1.000:16658:Mafb:v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian):::Krml,Kreisler,Krml1
TLX1..3_NFIC{dimer}.p2		1.000:21908:Tlx1:T-cell leukemia, homeobox 1:::Hox-11,Hox11	0.947:27140:Tlx3:T-cell leukemia, homeobox 3:::Rnx,Tlx1l2,Hox11l2
NKX3-2.p2		1.000:12020:Nkx3-2:NK3 homeobox 2:::Nkx-3.2,Bapx1
ATF5_CREB3.p2		1.000:107503:Atf5:activating transcription factor 5:::Atf7,AFTA,Atfx,ODA-10	0.750:12913:Creb3:cAMP responsive element binding protein 3:::LZIP-1,LZIP,Luman,LZIP-2
bHLH_family.p2		1.000:11865:Arntl:aryl hydrocarbon receptor nuclear translocator-like:::Bmal1,MOP3,bHLHe5,Arnt3	1.000:17342:Mitf:microphthalmia-associated transcription factor:::bHLHe32,wh,mi	1.000:17859:Mxi1:Max interacting protein 1:MXD::Mad2,bHLHc11	1.000:209446:Tcfe3:transcription factor E3:::Tfe-3,bHLHe33,Tfe3	1.000:12753:Clock:circadian locomotor output cycles kaput:KAT::bHLHe8,KAT13D	1.000:50913:Olig2:oligodendrocyte transcription factor 2:::Olg-2,Bhlhb1,bHLHe19,RK17	1.000:17122:Mxd4:Max dimerization protein 4:MXD::Mad4,bHLHc12	1.000:15214:Hey2:hairy/enhancer-of-split related with YRPW motif 2:::Hrt2,bHLHb32,Hesr2,Herp1,CHF1	1.000:15213:Hey1:hairy/enhancer-of-split related with YRPW motif 1:::bHLHb31,Hesr1,hesr-1,Herp2,HRT1	1.000:56198:Heyl:hairy/enhancer-of-split related with YRPW motif-like:::Hey3,Hrt3,bHLHb33,Hesr3	1.000:58805:Mlxipl:MLX interacting protein-like:::bHLHd14,Wbscr14,ChREBP,WS-bHLH	1.000:55927:Hes6:hairy and enhancer of split 6 (Drosophila):::bHLHb41	1.000:17121:Mxd3:Max dimerization protein 3:MXD::bHLHc13,Mad3	1.000:272322:Arntl2:aryl hydrocarbon receptor nuclear translocator-like 2:::MOP9,bHLHe6,BMAL2	1.000:15901:Id1:inhibitor of DNA binding 1:::Idb1,D2Wsu140e,bHLHb24	1.000:17428:Mnt:max binding protein:MXD::Rox,bHLHd3	1.000:50914:Olig1:oligodendrocyte transcription factor 1:::Olg-1,Bhlhb6,bHLHe21	1.000:18143:Npas2:neuronal PAS domain protein 2:::bHLHe9,MOP4
DMAP1_NCOR{1,2}_SMARC.p2		1.000:93761:Smarca1:SWI/SNF related, matrix associated, actin dependent regulator of chromatin,:::Snf2l	1.000:68094:Smarcc2:SWI/SNF related, matrix associated, actin dependent regulator of chromatin,:::	1.000:93762:Smarca5:SWI/SNF related, matrix associated, actin dependent regulator of chromatin,:::Snf2h,MommeD4	1.000:20185:Ncor1:nuclear receptor co-repressor 1:::N-CoR,Rxrip13	1.000:20602:Ncor2:nuclear receptor co-repressor 2:::SMRTe,SMRT	1.000:66233:Dmap1:DNA methyltransferase 1-associated protein 1:::
ADNP_IRX_SIX_ZHX.p2		1.000:20475:Six5:sine oculis-related homeobox 5 homolog (Drosophila):::MDMAHP,TrexBF,Dmahp	1.000:22770:Zhx1:zinc fingers and homeoboxes 1:ZNF::	1.000:50916:Irx4:Iroquois related homeobox 4 (Drosophila):IRX::	1.000:11538:Adnp:activity-dependent neuroprotective protein:::	1.000:320799:Zhx3:zinc fingers and homeoboxes 3:ZNF::Tix1	1.000:387609:Zhx2:zinc fingers and homeoboxes 2:ZNF::Raf,Afr-1,Afr1	1.000:54352:Irx5:Iroquois related homeobox 5 (Drosophila):IRX::	1.000:20472:Six2:sine oculis-related homeobox 2 homolog (Drosophila):::
HBP1_HMGB_SSRP1_UBTF.p2		1.000:97165:Hmgb2:high mobility group box 2:::Hmg2,HMG-2	1.000:15354:Hmgb3:high mobility group box 3:::Hmg2a,Hmg4	1.000:20833:Ssrp1:structure specific recognition protein 1:::Hmg1-rs1,Hmgox,Hmgi-rs3,T160	1.000:21429:Ubtf:upstream binding transcription factor, RNA polymerase I:::UBF1,UBF,Tcfubf	1.000:73389:Hbp1:high mobility group box transcription factor 1:::C86454
NANOG.p2		1.000:71950:Nanog:Nanog homeobox:::ecat4,ENK
NANOG{mouse}.p2		1.000:71950:Nanog:Nanog homeobox:::ecat4,ENK
POU5F1.p2		1.000:18999:Pou5f1:POU domain, class 5, transcription factor 1:::Otf3-rs7,Oct3/4,Otf-4,Oct-3,Oct4,Otf3,Oct-3/4,Otf3g,Otf-3,Otf4,Oct-4
POU5F1_SOX2{dimer}.p2		1.000:18999:Pou5f1:POU domain, class 5, transcription factor 1:::Otf3-rs7,Oct3/4,Otf-4,Oct-3,Oct4,Otf3,Oct-3/4,Otf3g,Otf-3,Otf4,Oct-4	1.000:20674:Sox2:SRY-box containing gene 2:SOX::ysb,Sox-2,lcc
SPI1.p2		1.000:20375:Sfpi1:SFFV proviral integration 1:::Sfpi-1,PU.1,Spi-1,Tcfpu1,Dis-1,Tfpu.1
SOX2.p2		1.000:20674:Sox2:SRY-box containing gene 2:SOX::ysb,Sox-2,lcc
SP1.p2		1.000:20683:Sp1:trans-acting transcription factor 1:::Sp1-1
CTCF.p2		1.000:13018:Ctcf:CCCTC-binding factor:::
EHF.p2		1.000:13661:Ehf:ets homologous factor:::
TFEB.p2		1.000:21425:Tcfeb:transcription factor EB:::bHLHe35,TFEB
EOMES.p2		1.000:13813:Eomes:eomesodermin homolog (Xenopus laevis):::Tbr2
TCF4_dimer.p2		1.000:21413:Tcf4:transcription factor 4:::E2.2,bHLHb19,SEF-2,TFE,ME2,ITF-2b,ASP-I2,MITF-2A,SEF2-1,E2-2,ITF-2,MITF-2B
EWSR1-FLI1.p2	fusion protein between EWSR1 and FLI1 in an oncogenic event	1.000:14247:Fli1:Friend leukemia integration 1:Ets::EWSR2,Sic1,SIC-1,Fli-1	1.000:14030:Ewsr1:Ewing sarcoma breakpoint region 1:Ets::Ews
FEV.p2		1.000:260298:Fev:FEV (ETS oncogene family):Ets::Pet1,mPet-1
IRF1,2,7.p3		1.000:16362:Irf1:interferon regulatory factor 1:::Irf-1	1.000:16363:Irf2:interferon regulatory factor 2:::Irf-2	1.000:54123:Irf7:interferon regulatory factor 7:::
NR4A2.p2	monomer	1.000:18227:Nr4a2:nuclear receptor subfamily 4, group A, member 2:Hormone-nuclear Receptor::RNR-1,HZF-3,Nurr1
